So I am in the process of returning this bike back to life. I traced the wiring from the start button to the junction box under the seat near the battery. Only issue, once I hit the button I don't get a signal out of the box to the starter relay. The relay is brand new, I jumped the old one and the starter is also good. Need some help maybe bypassing or locating something to check. Thank you in advance.

 

You need to test the starter Circuit Relay in the Junction Box.
Get yourself a Manual, Best Tool for diagnostics.